PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025694-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family B3
Protein Properties Length: 276aa    MW: 31446.5 Da    PI: 4.5292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025694-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-1487188199
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                            f+k+l +sdv+ ++r++lpk+ ae h   ++ +e++ +++ d +g  +W +k+++  +++s++yvl+  + eFv  +gL + Df++ +
  SMil_00025694-RA_Salv  87 FKKQLRNSDVGVLRRMILPKREAEIHlpVLEAKEGIPISMLDMDGiHEWWFKYRFwpNNSSRMYVLE-YTGEFVYTHGLVTDDFILVY 173
                            89*********************999**555567788********9*******99888999999999.99***************999 PP

                            E-SS.SEE..EEEEE-S CS
                     B3  84 ldgr.sefelvvkvfrk 99 
                              ++ +++++ + +++k
  SMil_00025694-RA_Salv 174 --QNvEDGRYIIEARKK 188
                            ..666999998888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-2183190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-1785189IPR015300DNA-binding pseudobarrel domain
CDDcd100173.91E-2086187No hitNo description
SMARTSM010193.5E-1287189IPR003340B3 DNA binding domain
PfamPF023621.8E-1087188IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDITGDGKEV MGSGSANAAE EGSARGRGRR QRNQQQRPDL LSGNVQRGPR MPRARRASLE  60
GLALPGAHVP PLPVAREIDL SKLAYLFKKQ LRNSDVGVLR RMILPKREAE IHLPVLEAKE  120
GIPISMLDMD GIHEWWFKYR FWPNNSSRMY VLEYTGEFVY THGLVTDDFI LVYQNVEDGR  180
YIIEARKKGQ DLAPRIFNNL SIIEAAPELA LPELPELPVL EDTELVYAYD NDFFNNSPLD  240
IDYMGESLNL PSLGSDSSFE AIEDFNPEDF EFEWRE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098957.11e-109PREDICTED: B3 domain-containing transcription factor FUS3-like isoform X1
SwissprotQ9LW311e-53FUS3_ARATH; B3 domain-containing transcription factor FUS3
TrEMBLA0A022QSZ86e-87A0A022QSZ8_ERYGU; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.13e-53B3 family protein